PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do007290.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bZIP
Protein Properties Length: 172aa    MW: 17754.9 Da    PI: 7.4455
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do007290.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1361.5e-113680448
                XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1  4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48
                 +r++r+ +NRe+ArrsR RK+  ++ L+  ++ L  eN   +  
  Do007290.1 36 QRRAKRMLSNRESARRSRMRKQRHLDDLTAQAAHLRRENAHVATA 80
                689************************************876655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.4E-153397IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.5533577IPR004827Basic-leucine zipper domain
PfamPF001701.1E-93678IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.64E-113786No hitNo description
Gene3DG3DSA:1.20.5.1702.5E-937108No hitNo description
CDDcd147027.27E-163886No hitNo description
PROSITE patternPS0003604055IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MASSSGSGSS GSLSAATAAL AAAAGTEEEL RALMEQRRAK RMLSNRESAR RSRMRKQRHL  60
DDLTAQAAHL RRENAHVATA LGLTTQGFLA VDAENAVLRT QAAELAARLG SLNDILACMN  120
TNAAAAAGAV AVSLTAAAAA AASASSDPYL TFDGATAFDD LLRSCPEMFQ LC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14956RRSRMRKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00239DAPTransfer from AT1G75390Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0673560.0BT067356.2 Zea mays full-length cDNA clone ZM_BFc0022C11 mRNA, complete cds.
GenBankBT0853010.0BT085301.2 Zea mays full-length cDNA clone ZM_BFb0368K21 mRNA, complete cds.
GenBankBT0853530.0BT085353.2 Zea mays full-length cDNA clone ZM_BFc0002B07 mRNA, complete cds.
GenBankHQ8587960.0HQ858796.1 Zea mays clone UT1860 bZIP transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002453262.13e-77hypothetical protein SORBIDRAFT_04g002700
TrEMBLC5XTV64e-77C5XTV6_SORBI; Putative uncharacterized protein Sb04g002700
STRINGSb04g002700.11e-76(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44593367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34590.11e-34G-box binding factor 6